{"id":8,"date":"2015-06-03T08:43:27","date_gmt":"2015-06-03T12:43:27","guid":{"rendered":"http:\/\/umaine.edu\/brawleylab\/?page_id=8"},"modified":"2018-02-12T10:17:08","modified_gmt":"2018-02-12T15:17:08","slug":"research","status":"publish","type":"page","link":"https:\/\/umaine.edu\/brawleylab\/research\/","title":{"rendered":"Research"},"content":{"rendered":"<p>[SlideDeck2 id=158]<\/p>\n<p><span class=\"subHeader\">Selected Recent Publications <\/span><\/p>\n<p>Brawley, S. H., Nicolas A. Blouin, Elizabeth Ficko-Blean, Glen L. Wheeler, Martin Lohr, Holly Goodson, Jerry W. Jenkins, Crysten E. Blaby-Haas, Katherine E. Helliwell, Cheong Xin Chan, Tara Marriage, Debashish Bhattacharya, Anita S. Klein, Yacine Badis, Juliet Brodie, Yuanyu Cao, Jonas Coll\u00e9n, Simon M. Dittami, Claire M. M. Gachon, Beverley R. Green, Steven J. Karpowicz, Jay W. Kim, Ulrich Johan Kudahl, Senjie Lin, Gurvan Michel, Maria Mittag, Bradley J. S. C. Olson, Jasmyn Pangilinan, Yi Peng, Huan Qiu, Shengqiang Shu, John T. Singer, Alison G. Smith, Brittany N. Sprecher, Volker Wagner, Wenfei Wang, Zhi-Yong Wang, Juying Yan, Charles Yarish, Simone Z\u00e4uner-Riek, Yunyun Zhuang, Yong Zou, Erika A. Lindquist, Jane Grimwood, Kerrie Barry, Daniel S. Rokhsar, Jeremy Schmutz, John W. Stiller, Arthur R. Grossman, Simon E. Prochnik<sup>. <\/sup>2017. Insights into the red algae and eukaryotic evolution from the genome of <em>Porphyra umbilicalis <\/em>(Bangiophyceae, Rhodophyta). <em>Proc. Natl. Acad. Sci. U.S. <\/em><a href=\"http:\/\/www.pnas.org\/cgi\/doi\/10.1073\/pnas.1703088114\">www.pnas.org\/cgi\/doi\/10.1073\/pnas.1703088114<\/a> (Includes 106 page SI Appendix).<\/p>\n<p>Wells, M., Potin, P., Craigie, J., Raven, J., Merchant, S., Helliwell, K., Smith, A., Camire, M. &amp; S. H. Brawley. 2017. Algae as nutritional and functional food sources: Revisiting our understanding. <em>J. Appl.Phycol.<\/em> 29: 949-982. doi:10.1007\/s10811-016-0974-5.<\/p>\n<p>Kim, J., Brawley, S. H., Prochnik, S., Schmutz, J., Jenkins, J., Stiller, J., &amp; A. R. Grossman. 2016.Genome analysis of Planctomycetes inhabiting blades of the red alga <em>Porphyra umbilicalis<\/em>. <em>PLoS ONE<\/em> 11(3): e0151883.<\/p>\n<p>Miranda, L., Hutchison, K., Grossman, A. &amp; S. H. Brawley. 2013. Diversity and abundance of \u00a0\u00a0 the bacterial community of the red macroalga <em>Porphyra umbilicalis<\/em>: Did bacterial farmers produce macroalgae? <em>PLoS ONE<\/em> 8(3) e58269. doi:10.1371\/journal.pone.0058269<\/p>\n<p>Blouin, N. A. &amp; S. H. Brawley. 2012. An AFLP analysis of clonality in widespread asexual populations of <em>Porphyra umbilicalis<\/em> (Rhodophyta) with a sensitivity analysis for bacterial contamination. <em>Marine Biology<\/em> 159, 2723-2729.<\/p>\n<p>Stiller, J. W., Perry, J., Rymarquis, L. A., Green, P. J., Prochnik, S., Lindquist, E., Chan, C. X., Yarish, C., Lin, S., Zhuang, Y., Blouin, N. A. &amp; S. H. Brawley. 2012. Major developmental regulators and their expression in two closely related species of <em>Porphyra<\/em> (Rhodophyta). <em>J. Phycol.<\/em> 48, 883-896.<\/p>\n<p>Chan, C. X., Berg, M., Z\u00e4uner, S., Benning, C., Wheeler, G., Levine, I., Grossman, A. R., Blouin, N. A., Prochnik, S. E., Eriksen, R. L., Klein, A. S., Yarish, C., Brawley, S. H. &amp; \u00a0 D. Bhattacharya. 2012. Analysis of <em>Porphyra<\/em> membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems. <em>Plant Physiology<\/em> (DOI:10.1104\/pp.112.193896).<\/p>\n<p>Chan, C. X., N. Blouin, Y.Y. Zhuang, S. Zauner, S. Prochnik, E. Lindquist, S. Lin, C. Benning, M. Lohr, C. Yarish, E. Gantt, A. Grossman, S. Lu, K. Muller, J. Stiller, S. Brawley, D. Bhattacharya. 2012. <em>Porphyra <\/em>(Bangiophyceae) transcriptomes provide insights into red algal development and metabolism. <em>J.<\/em> <em>Phycol.<\/em> 48, 1328-1342. 7<\/p>\n<p>Muhlin, J. F., Coleman, M. A., Rees, T. A. V. &amp; S. H. Brawley. 2011. Modeling of reproduction \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 in the intertidal macrophyte <em>Fucus vesiculosus<\/em> L. and implications for spatial subsidies in \u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 the nearshore environment. <em>Mar. Ecol. Prog. Ser<\/em>. 440, 79-94 (DOI: 10.3354\/meps09350).<\/p>\n<p>Johnson, L. A., Brawley, S. H. &amp; W. H. Adey. 2011. Factors explaining the continued spread of\u00a0 <em>Fucus serratus<\/em> in the Canadian Maritimes. <em>Biological Invasions<\/em> DOI: 10.1007\/s10530-01109976-z.<\/p>\n<p>Blouin, N., Brodie, J., Pu, X., Grossman, A. &amp; S. H. Brawley. 2011. <em>Porphyra<\/em>: A marine crop shaped by stress. <em>Trends in Plant Science<\/em> 16, 29-37.<\/p>\n<p>CABI. 2010. <em>Littorina littorea<\/em> [original text by S. Brawley]. In: <u>Invasive Species Compendium<\/u>. Wallingford, UK: CABI. <a href=\"http:\/\/www.cabi.org\/isc\">CABI<\/a> [26 published pages].<\/p>\n<p>Gantt, E. and 18 intermediate authors &amp; S. H. Brawley. 2010. <em>Porphyra<\/em>: Complex life histories in a harsh environment. <em>P. umbilicalis<\/em>, the genomics\u2019 project. In: J. Seckbach &amp; D. Chapman (eds), <u>Red Algae in the Genomic Age<\/u> (v. 13, Cellular Origins, Life in Extreme Habitats and Astrobiology), Springer, pp 129-148.<\/p>\n<p>Muhlin, J. &amp; S. H. Brawley. 2009. Recent versus relic: Discerning the genetic signature of <em>Fucus vesiculosus<\/em> (Heterokontophyta; Phaeophyceae) in the northwestern Atlantic. <u>J. Phycol<\/u>. 45, 828-837.<\/p>\n<p>Brawley, S. H., J. A. Coyer, A. M. H. Blakeslee, G. Hoarau, L. E. Johnson, J. E. Byer, W. T. Stam &amp; J. L. Olsen. 2009. Historical invasions of the intertidal zone of Atlantic North America associated with distinctive patterns of trade and emigration. <em>Proc. Natl. Acad. Sci., U.S.A.<\/em> 106, 8239-8244 (doi: 10.1073\/pnas.0812300106).<\/p>\n<p>Brawley, S. H., J. Pusey, B. J. W. Cole, L. E. Gott and S. A. Norton. 2008. A revolutionary model to improve science education, teachers, and scientists. <u>Maine Policy Review<\/u> 17, 68-81.<\/p>\n<p>Schmidt, P. S., E. A. Serr\u00e3o, G. A. Pearson, C. Riginos, P. D. Rawson, T. J. Hilbish, S. H. Brawley, G. C. Trussell, E. Carrington, D. S. Wethey, J. W. Grahame, F. Bonhomme, and D. M. Rand. 2008. Ecological genetics in the North Atlantic intertidal: Environmental gradients, replicated clines, and adaptation at specific loci. <u>Ecology<\/u> 89, S91-S107.<\/p>\n<p class=\"smallText style7\">Brawley, S. H., J. A. Coyer, A. M. H. Blakeslee, G. Hoarau, L. E. Johnson, J. E. Byer, W. T. Stam &amp; J. L. Olsen. 2009. Historical invasions of the intertidal zone of Atlantic North America associated with distinctive patterns of trade and emigration. Proc. Natl. Acad. Sci., U.S.A. 106, 8239-8244 (doi: 10.1073\/pnas.0812300106). Full Text:\u00a0<a title=\"PDF\" href=\"https:\/\/umaine.edu\/brawleylab\/wp-content\/uploads\/sites\/443\/2015\/06\/PNAS_2009.pdf\">PDF<\/a><\/p>\n<p class=\"smallText style7\">Muhlin, J. &amp; S. H. Brawley. 2009. Recent versus relic: Discerning the genetic signature of<br \/>\nFucus vesiculosus (Heterokontophyta; Phaeophyceae) in the northwestern Atlantic. J. Phycol. 45, 828-837.<\/p>\n<p class=\"smallText style7\">Brawley, S. H., J. Pusey, B. J. W. Cole, L. E. Gott and S. A. Norton. 2008. A revolutionary model to<br \/>\nimprove science education, teachers, and scientists. Maine Policy Review 17, 68-81. <a href=\"https:\/\/umaine.edu\/brawleylab\/wp-content\/uploads\/sites\/443\/2015\/06\/MPP_Brawleyet-al.pdf\">Full Text:\u00a0PDF<\/a><\/p>\n<p class=\"smallText style7\">Muhlin, J. F., C. R. Engel, R. Stessel, R. A. Weatherbee and S. H. Brawley. 2008. The influence of coastal topography, circulation patterns and rafting in structuring populations of an intertidal alga. Molec. Ecol. 17, 1198-1210. <a href=\"https:\/\/umaine.edu\/brawleylab\/wp-content\/uploads\/sites\/443\/2015\/06\/Muhlin-et-al_2008_MolecEcol.pdf\">Full Text:\u00a0PDF<\/a><\/p>\n<p class=\"smallText style7\">Blouin, N. B., X. G. Fei, J. Peng, C. Yarish, and S. H. Brawley. 2007. Seeding nets with neutral spores of the red alga Porphyra umbilicalis (L.) K\u00fctzing for use in integrated multi-trophic aquaculture (IMTA). Aquaculture 270, 77-91.<\/p>\n<p class=\"smallText style7\">Koester, J., S. H. Brawley, L. Karp-Boss and D. G. Mann. 2007. Sexual reproduction in the marine centric diatom Ditylum brightwellii (Bacillariophyta). Eur. J. Phycol. 42, 351-366.<\/p>\n<p class=\"smallText style7\">Blouin, N., B. L. Calder, B. Perkins, and S. H. Brawley. 2006. Sensory and fatty acid analyses of<br \/>\ntwo Atlantic species of Porphyra (Rhodophyta). J. Appl. Phycol. 18, 79-85.<\/p>\n<p class=\"smallText style7\">Coleman, M. and S. H. Brawley. 2005. Spatial and temporal variability in dispersal and<br \/>\npopulation genetic structure of a rockpool alga. Mar. Ecol. Prog. Ser. 300, 63-77.<\/p>\n<p class=\"smallText style7\">Gordon, R. and S. H. Brawley. 2004. Effects of water motion on propagule release from algae with complex life histories. Mar. Biol. 145, 21-29<\/p>\n","protected":false},"excerpt":{"rendered":"<p>[SlideDeck2 id=158] Selected Recent Publications Brawley, S. H., Nicolas A. Blouin, Elizabeth Ficko-Blean, Glen L. Wheeler, Martin Lohr, Holly Goodson, Jerry W. Jenkins, Crysten E. Blaby-Haas, Katherine E. Helliwell, Cheong Xin Chan, Tara Marriage, Debashish Bhattacharya, Anita S. Klein, Yacine Badis, Juliet Brodie, Yuanyu Cao, Jonas Coll\u00e9n, Simon M. Dittami, Claire M. M. 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