{"id":1329,"date":"2023-02-06T14:08:47","date_gmt":"2023-02-06T19:08:47","guid":{"rendered":"https:\/\/umaine.edu\/bradylab\/?page_id=1329"},"modified":"2026-03-02T11:56:24","modified_gmt":"2026-03-02T16:56:24","slug":"publications","status":"publish","type":"page","link":"https:\/\/umaine.edu\/bradylab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<div class=\"alignfull wp-block-ugb-header ugb-header ugb-d3d0887 ugb-header ugb-header--v3 ugb-header--design-basic ugb-main-block ugb--has-custom-content-width ugb-main-block--inner-wide ugb--has-block-background ugb--has-background-overlay\"><style>.ugb-d3d0887 .ugb-header__item{border-style:solid !important;border-color:#000000 !important;border-top-width:1px !important;border-right-width:1px !important;border-bottom-width:1px !important;border-left-width:1px !important;background-color:rgba(0,0,0,0) !important}.ugb-d3d0887 .ugb-header__item:before{background-color:#000000 !important}.ugb-d3d0887 .ugb-header__title{font-size:40px !important;font-weight:800 !important;color:#000000;text-align:left !important}.ugb-d3d0887 .ugb-header__subtitle{font-size:22px !important;font-weight:600 !important;color:var(--stk-global-color-88711,#313131)}.ugb-d3d0887 .ugb-header__buttons{justify-content:flex-start !important}.ugb-d3d0887 .ugb-button1 .ugb-button--inner{font-family:\"Lato\",Sans-serif !important;font-size:20px !important;font-weight:normal !important}.ugb-d3d0887 .ugb-button1{background-color:var(--stk-global-color-88711,#313131);border-radius:100px !important}.ugb-d3d0887 .ugb-button1 .ugb-button--inner,.ugb-d3d0887 .ugb-button1 svg:not(.ugb-custom-icon){color:#ffffff !important}.ugb-d3d0887 .ugb-button1:before{border-radius:100px !important}.ugb-d3d0887 .ugb-button2 .ugb-button--inner{font-family:\"Lato\",Sans-serif !important;font-size:20px !important;font-weight:normal !important}.ugb-d3d0887 .ugb-button2{background-color:#ffffff;padding-top:8px;padding-right:26px;padding-bottom:8px;padding-left:26px;opacity:1;border-radius:100px !important}.ugb-d3d0887 .ugb-button2 .ugb-button--inner,.ugb-d3d0887 .ugb-button2 svg:not(.ugb-custom-icon){color:#000000 !important}.ugb-d3d0887 .ugb-button2:hover{opacity:1}.ugb-d3d0887 .ugb-button2:before{border-radius:100px !important}.ugb-d3d0887 .ugb-inner-block{text-align:left}.ugb-d3d0887.ugb-header{justify-content:flex-start;background-color:#ffffff;background-image:url(https:\/\/umaine.edu\/bradylab\/wp-content\/uploads\/sites\/582\/2020\/09\/IMG_0215-scaled.jpg)}.ugb-d3d0887.ugb-header > .ugb-inner-block{min-width:auto !important;max-width:1037px !important}.ugb-d3d0887.ugb-header:before{background-image:linear-gradient(170deg,#ffffff 56%,#000000 69%);opacity:0.5}@media screen and (min-width:768px){.ugb-d3d0887 > .ugb-inner-block > .ugb-block-content > *{min-height:650px;justify-content:center !important}}@media screen and (max-width:768px){.ugb-d3d0887 .ugb-header__title{font-size:33px !important}.ugb-d3d0887.ugb-header{min-height:50vh}}<\/style><div class=\"ugb-inner-block ugb-inner-block--wide\"><div class=\"ugb-block-content\"><div class=\"ugb-header__item ugb--shadow-9\"><div class=\"ugb-content-wrapper\"><h1 class=\"ugb-header__title\">View our publications<\/h1><div class=\"ugb-header__buttons\"><div class=\"ugb-button-container\"><a class=\"ugb-button1 ugb-button ugb-button--size-small ugb--hover-effect-scale-more\" href=\"https:\/\/scholar.google.com\/citations?hl=en&amp;user=oNZUQS8AAAAJ&amp;view_op=list_works&amp;sortby=pubdate\" target=\"_blank\" rel=\"noopener noreferrer\" title=\"\"><span class=\"ugb-button--inner\">Damian&#8217;s Google Scholar Profile<\/span><\/a><\/div><div class=\"ugb-button-container\"><a class=\"ugb-button2 ugb-button ugb-button--size-small ugb--hover-effect-scale-more\" href=\"https:\/\/www.researchgate.net\/profile\/Damian-Brady\" target=\"_blank\" rel=\"noopener noreferrer\" title=\"\"><span class=\"ugb-button--inner\">Damian&#8217;s ResearchGate Profile<\/span><\/a><\/div><\/div><\/div><\/div><\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-ugb-accordion ugb-accordion ugb-9f458f8 ugb-accordion--v2 ugb-accordion--design-basic ugb-accordion--single-open ugb-main-block\" aria-expanded=\"false\"><style>.ugb-9f458f8 .ugb-accordion__heading{border-radius:12px !important;border-style:solid !important;border-color:#000000 !important;border-top-width:1px !important;border-right-width:1px !important;border-bottom-width:1px !important;border-left-width:1px !important}.ugb-9f458f8 .ugb-accordion__title{font-size:20px !important;color:#000000}.ugb-9f458f8 .ugb-inner-block{text-align:left}<\/style><div class=\"ugb-inner-block\"><div class=\"ugb-block-content\"><div class=\"ugb-accordion__item\"><div class=\"ugb-accordion__heading ugb--shadow-5\" role=\"button\" tabindex=\"0\"><h4 class=\"ugb-accordion__title\"><strong>Manuscripts in review or revision<\/strong><\/h4><svg xmlns=\"http:\/\/www.w3.org\/2000\/svg\" viewBox=\"0 0 20 20\" class=\"ugb-accordion__arrow\" width=\"20\" height=\"20\"><path d=\"M16.7 3.3L10 10 3.3 3.4 0 6.7l10 10v-.1l10-9.9z\"><\/path><\/svg><\/div><div class=\"ugb-accordion__content\" role=\"region\"><div class=\"ugb-accordion__content-inner\">\n<p>Liberti, C.M., Testa, J.M., Mayer, L.M., Salisbury, J., &amp; Brady, D.C. (<em>in review<\/em>) The relationship between carbonate chemistry, estuarine metabolism, and spring-neap tidal cycles in a northern temperate estuary. <em>Estuaries and Coasts<\/em><\/p>\n\n\n\n<p>Jarrett, R.N., Reardon, K., Steneck, R., &amp; Brady, D.C. (<em>major revisions<\/em>) Multiple independent indicators of American lobster in Maine: Patterns in space and time. <em>Marine Ecology Progress Series<\/em><\/p>\n\n\n\n<p>Siedlecki, S.A., Nmor, S., Lessin, G., Kearney, K.A., Rakshit, S., Petrik, C.M., Luo, J.Y., Schultz, C., Sasaki, D., Gillen, K., Pham, A., Somes, C., Brady, D.C., Testa, J.M., Rabouille, C., Elegbede, I, &amp; Sulpis, O. (<em>pre-print<\/em>) Sediment Model Intercomparison Project (SedMIP): motivation and guidance for its experimental design. Geoscientific Model Development. <em><a href=\"https:\/\/doi.org\/10.5194\/egusphere-2025-1846\">https:\/\/doi.org\/10.5194\/egusphere-2025-1846<\/a><\/em><\/p>\n<\/div><\/div><\/div><\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-ugb-accordion ugb-accordion ugb-1afdb94 ugb-accordion--v2 ugb-accordion--design-basic ugb-accordion--single-open ugb-main-block\" aria-expanded=\"false\"><style>.ugb-1afdb94 .ugb-accordion__heading{border-style:solid !important;border-color:#000000 !important;border-top-width:1px !important;border-right-width:1px !important;border-bottom-width:1px !important;border-left-width:1px !important}.ugb-1afdb94 .ugb-accordion__title{font-size:20px !important}<\/style><div class=\"ugb-inner-block\"><div class=\"ugb-block-content\"><div class=\"ugb-accordion__item\"><div class=\"ugb-accordion__heading ugb--shadow-5\" role=\"button\" tabindex=\"0\"><h4 class=\"ugb-accordion__title\"><strong><strong>In press<\/strong><\/strong><\/h4><svg xmlns=\"http:\/\/www.w3.org\/2000\/svg\" viewBox=\"0 0 20 20\" class=\"ugb-accordion__arrow\" width=\"20\" height=\"20\"><path d=\"M16.7 3.3L10 10 3.3 3.4 0 6.7l10 10v-.1l10-9.9z\"><\/path><\/svg><\/div><div class=\"ugb-accordion__content\" role=\"region\"><div class=\"ugb-accordion__content-inner\">\n<p>Greenlee, S., Sleith, R.S., Brady, D.C., &amp; Countway, P.D. (2025) Characterizing seasonal persistence of low levels <em>Pseudo-nitzschia australis<\/em> in the Gulf of Maine with environmental DNA. <em>Harmful Algae. <\/em><a href=\"https:\/\/doi.org\/10.1016\/j.hal.2025.103039\" target=\"_blank\" rel=\"noreferrer noopener\"><em>https:\/\/doi.org\/10.1016\/j.hal.2025.103039<\/em><\/a><\/p>\n\n\n\n<p>Moscicki, Z., St. Gelais, A.T., Coleman, S., Kinley, A., Dewhurst, T., Lindell, S., Fredriksson, D.W., &amp; Brady, D.C. (2025) Comprehensive quantification of production costs for large-scale kelp aquaculture and cost reduction opportunities. <em><em>Algal Research. 92. 104383. <\/em><a href=\"https:\/\/doi.org\/10.1016\/j.algal.2025.104383\" target=\"_blank\" rel=\"noreferrer noopener\"><em>https:\/\/doi.org\/10.1016\/j.algal.2025.104383<\/em><\/a><\/em><\/p>\n\n\n\n<p>Goode, A., Brown, C., Drouin, J., Kleman, K., Reardon, K., Brady, D.C., &amp; Wahle, R. (2025) A natural experiment in thermal stratification reveals heterogeneous American lobster settlement dynamics in the Gulf of Maine. <em>Marine Ecology Progress Series<\/em>. <em><a href=\"https:\/\/doi.org\/10.3354\/meps15076\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3354\/meps15076<\/a><\/em><\/p>\n\n\n\n<p>Avena, S., Noll, A.L., Davis, C.V., Jourdet, C., Salter, B., Houston, T., Brady, D.C. (2025) A cross-hatchery collaborative approach to developing hatchery techniques for the Atlantic sea scallop, <em>Placopecten magellanicus<\/em>. <em><em>Aquaculture, 613, 743441. <a href=\"https:\/\/doi.org\/10.1016\/j.aquaculture.2025.743441\">https:\/\/doi.org\/10.1016\/j.aquaculture.2025.743441<\/a><\/em><\/em><\/p>\n\n\n\n<p>Schultz, C., Luo, J.Y., &nbsp;Brady, D.C., Fulweiler, R.W., Long, M.H., Petrik, C.M., Testa, J., &nbsp;Benway, H.M., Burdige, D., Cecchetto, M.M., Elegbede, I., Evans, N., Frenzel, A., Gillen, K., Herbert, L.C., Hirsch, H., Lessin, G., Levin, L., Maiti, K., Malkin, S., Mincks, S.L., Nmor, S., Pham, A., Pinckney, J., Rabouille, C., Rahman, S., Rakshit, S., Ray, N.E., Sasaki, D.K., Siedlecki, S.A., Somes, C., Stubbins, A., Sulpis, O., Trevisan, C., Xu, Y., Yin, H. (2025) Elucidating the role of marine benthic carbon in a changing world. <em>Global Biogeochemical <em>Cycles. <\/em><a href=\"https:\/\/doi.org\/10.1029\/2025GB008643\"><em>https:\/\/doi.org\/10.1029\/2025GB008643<\/em><\/a><\/em><\/p>\n\n\n\n<p>Kiffney, T., Lavaud, R., Jiang, B., Boss, E., Bouali, M., Nagel, G., De Carvalho, L. A. S., &amp; Brady, D. C. (2026). Using dynamic energy budget modeling and high-resolution satellite products to predict eastern oyster growth at a farm scale. <em>Aquaculture, 612<\/em>, 743133. <a href=\"https:\/\/doi.org\/10.1016\/j.aquaculture.2025.743133\">https:\/\/doi.org\/10.1016\/j.aquaculture.2025.743133<\/a><\/p>\n\n\n\n<p>Ross, C.H., Roberts, J.J., Pendleton, D.E., Brady, D.C., Stamieszkin, K., Record, N. (2025) Incorporating prey fields into North Atlantic right whale density surface models. <em>Endangered Species Research, 58<\/em>, 67\u201384. <a href=\"https:\/\/doi.org\/10.3354\/esr01435\">https:\/\/doi.org\/10.3354\/esr01435<\/a><\/p>\n\n\n\n<p>Kiffney, T., Lavaud, R., Rawson, P., Wikfors, G.H., &amp; Brady, D.C. (2025). Culture performance and physiology of triploid eastern oysters (<em>Crassostrea virginica<\/em>) in their Northern range. <em>Aquaculture. <\/em><a href=\"https:\/\/doi.org\/10.1016\/j.aquaculture.2025.742788\" target=\"_blank\" rel=\"noreferrer noopener\"><em>https:\/\/doi.org\/10.1016\/j.aquaculture.2025.742788<\/em><\/a><\/p>\n\n\n\n<p>Noren, C., Coleman, S., Brayden, C., Chingos, A., Morse, D., Peters, A., &amp; Brady, D.C. (2025) Techno-economic assessment of ear-hanging equipment in Atlantic sea scallop, <em>Placopecten magellanicus<\/em>, aquaculture in the Gulf of Maine. <em>Aquaculture. <\/em><a href=\"https:\/\/doi.org\/10.1016\/j.aquaculture.2025.742775\" target=\"_blank\" rel=\"noreferrer noopener\"><em>https:\/\/doi.org\/10.1016\/j.aquaculture.2025.742775<\/em><\/a><\/p>\n\n\n\n<p>Farrell, S.P., Petras, D., Stincone, P., Yiu, D.S., Burns, J.A., Shah, A.K.P., Hartmann, A.C., Brady, D.C., &amp; Rasher, D.B. (2025) Turf algae redefine the chemical landscape of temperate reefs, limiting kelp forest recovery. <em>Science.<\/em> 388<em>, <\/em>876-880<em> https:\/\/doi:10.1126\/science.adt6788<\/em><\/p>\n\n\n\n<p>Krasnow, R., Kiffney, T., Cuddy, R. &amp; Brady, D.C. (2025) Interacting effects of environment and cultivation method on biofouling of farmed oysters (<em>Crassostrea virginica<\/em>). <em>Journal of the World Aquaculture Society. <a href=\"https:\/\/doi:10.1111\/jwas.70012\">https:\/\/doi:10.1111\/jwas.70012<\/a><\/em><\/p>\n\n\n\n<p>Lancaster, E., Grey, E., Brady, D.C., &amp; Frederich, M. (2025) Squishy and Crunchy Invasive Invertebrates: environmental DNA is not shed equally. <em>Environmental DNA. <a href=\"https:\/\/doi:10.1002\/edn3.70072\">https:\/\/doi:10.1002\/edn3.70072<\/a><\/em><\/p>\n\n\n\n<p>Noren, C.B., Coleman, S., St. Gelais, A., Morse, D., Kiffney, T., Peters, A., &amp; Brady, D.C. (2025) Comparing growth of ear-hanging and lantern net cultured Atlantic sea scallops, <em>Placopecten magellanicus<\/em>, over a complete grow-out cycle to determine optimal harvest timing. <em>Aquaculture. <\/em>603, <a href=\"https:\/\/doi.org\/10.1016\/j.aquaculture.2025.742408\" target=\"_blank\" rel=\"noreferrer noopener\"><em>https:\/\/doi.org\/10.1016\/j.aquaculture.2025.742408<\/em><\/a><\/p>\n\n\n\n<p>Jarrett, R.N., Brady, D.C., Wahle, R.R., &amp; Steneck, R.S. (2024) Shifts in habitat use and demography of American lobsters in coastal Maine over the past quarter century. <em>Marine Ecology Progress Series. <a href=\"https:\/\/doi.org\/10.3354\/meps14691\">https:\/\/doi.org\/10.3354\/meps14691<\/a><\/em><\/p>\n\n\n\n<p>Rzeszowski, E. J., Reardon, K.M. and Brady, D.C. (2024) Integrating <em>in situ<\/em> environmental covariates in an American lobster catch model to improve impact assessment, <em>Fisheries Research<\/em>, 280, 107163, <em><a href=\"https:\/\/doi.org\/10.1016\/j.fishres.2024.107163\">https:\/\/doi.org\/10.1016\/j.fishres.2024.107163<\/a><\/em>.<\/p>\n\n\n\n<p>Friedland, K. Fratantoni, P., Melrose, C., Morse, R., Large, S., Townsend, D. Brady, D.C., Friedrich, M., Silver, A., Gangopadhyay, A. (2024) Changing source waters on the Northeast US Continental Shelf: variation in nutrient supply and phytoplankton biomass. <em>Continental Shelf Research<\/em> 281, 105319<em>, <a href=\"https:\/\/doi.org\/10.1016\/j.csr.2024.105319\">https:\/\/doi.org\/10.1016\/j.csr.2024.105319<\/a>.<\/em><\/p>\n\n\n\n<p>Testa, J.M., Liu, W., Boynton, W.R., Breitburg, D., Friedrichs, C., Li, M., Parrish, D., Trice, T.M., &amp; Brady, D.C<em>.<\/em>&nbsp;Physical and Biological Controls on Short-Term Variations in Dissolved Oxygen in Shallow Waters of a Large Temperate Estuary.&nbsp;<em>Estuaries and Coasts<\/em>&nbsp;(2024). <em><a href=\"https:\/\/doi.org\/10.1007\/s12237-024-01372-5\">https:\/\/doi.org\/10.1007\/s12237-024-01372-5<\/a><\/em><\/p>\n\n\n\n<p>Lancaster, E. R., D. C. Brady, and M. Frederich (2024). In Hot Water: Current Thermal Threshold Methods Unlikely to Predict Invasive Species Shifts in NW Atlantic. <em>Integrative and Comparative Biology<\/em>, <em><a href=\"https:\/\/doi:10.1093\/icb\/icae102\">https:\/\/doi:10.1093\/icb\/icae102<\/a>.<\/em><\/p>\n\n\n\n<p>Rzeszowski, E. J., K. M. Reardon, H. Henninger, J. T. Carloni and D. C. Brady (2024). Building confidence: Developing image-based methods to incorporate fishery-collected data in the American lobster stock assessment. <em>Fisheries Research<\/em> 276: 107055. <a href=\"https:\/\/doi.org\/10.1016\/j.fishres.2024.107055\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.fishres.2024.107055<\/a><\/p>\n\n\n\n<p>Friedland, K. D., Nielsen, J.M., Record, N. R., Brady D. C., &amp; Morrow, C.J. (2024). The phenology of the spring phytoplankton bloom in the North Atlantic does not trend with temperature. <em>Elementa: Science of the Anthropocene<\/em> 12(1). <em><a href=\"https:\/\/doi.org\/10.1525\/elementa.2023.00111\">https:\/\/doi.org\/10.1525\/elementa.2023.00111<\/a><\/em><\/p>\n\n\n\n<p>Leeman, C., Bouchard, D.A., Payne, E., Wahle, R.A., &amp; Brady, D.C. (2024) Predicting delayed post-harvest mortality in American lobster (<em>Homarus americanus<\/em>) using reflex impairment. <em>Fisheries Research<\/em>. 272 106948: &nbsp;<em><a href=\"https:\/\/doi.org\/10.1016\/j.fishres.2024.106948\">https:\/\/doi.org\/10.1016\/j.fishres.2024.106948<\/a><\/em><\/p>\n\n\n\n<p>Stevens, J., Jech, J.M., Zydlewski, G., &amp; Brady, D.C. (2023) Response of estuarine fish biomass to restoration in the Penobscot River, Maine. <em>Estuaries and Coasts. <a href=\"https:\/\/doi.org\/10.1007\/s12237-023-01292-w \"><em><em>https:\/\/<\/em><\/em>doi.org\/10.1007\/s12237-023-01292-w <\/a><sup>*<\/sup><\/em><\/p>\n\n\n\n<p>* <a href=\"https:\/\/cerf.memberclicks.net\/cesn-2024-issue-1\">https:\/\/cerf.memberclicks.net\/cesn-2024-issue-1<\/a> : Highlighted in <em>Coastal &amp; Estuarine Science News (CESN)<\/em><\/p>\n\n\n\n<p>Ishaq, S.L., Hosler, S., Dankwa, A., Jekielek, P., Brady, D.C., Grey, E., Haskell, H., Lasley-Rasher, R., Pepperman, K., Perry, J., Beal, B., &amp; Bowden, T.J. (2023) Bacterial community trends associated with sea scallop, <em>Placopecten magellanicus<\/em>, larvae in a hatchery system. <em>Aquaculture Reports. <a href=\"https:\/\/doi.org\/10.1016\/j.aqrep.2023.101693\">https:\/\/doi.org\/10.1016\/j.aqrep.2023.101693<\/a><\/em><\/p>\n\n\n\n<p>Tavora, J., Jiang, B., Kiffney, T., Bourdin, G., Gray, P.C., de Carvalho, L.S., Hesketh, G., Schild, K.M., de Souza, L.F., Brady, D.C., &amp; Boss, E. (2023) Recipes for the Derivation of Water Quality Parameters Using the High Spatial Resolution Data from Sensors on Board Sentinel-2A, -2B and Landsat-5, -7, -8, -9 Satellites. <em>Journal of Remote Sensing<\/em> <em><a href=\"https:\/\/doi.org\/10.34133\/remotesensing.0049\"><em>https:\/\/<\/em>doi.org\/10.34133\/remotesensing.0049<\/a><\/em><\/p>\n\n\n\n<p>McManus, M. C., Brady, D.C., Brown, C., Carloni, J. T., Giffin, M., Goode, A.G., Kleman, K., Lawton, P., Le Bris, A., Olszewski, S., Perry, D.N., Rochette, R., Shank, B.V., Wilson, C. M. and Wahle, R. A. (2023). The American Lobster Settlement Index: History, lessons, and future of a long-term, transboundary monitoring collaborative. <em>Frontiers in Marine Science 9. <a href=\"https:\/\/doi.org\/10.3389\/fmars.2022.1055557\"><em><em>https:\/\/<\/em><\/em>doi.org\/10.3389\/fmars.2022.1055557<\/a><\/em><\/p>\n\n\n\n<p>Fredriksson, D.W., St. Gelais, A., Dewhurst, T., Coleman, S., Brady, D.C., &amp; Costa-Pierce, B.A. (2023) Mooring tension assessment of a single line kelp farm with quantified biomass, waves, and currents. <em>Frontiers in Marine Science. Special Issue: Offshore Aquacultural Engineering and Its Interaction with the Marine Environment. <a href=\"https:\/\/doi.org\/10.3389\/fmars.2023.1178548\"><em><em>https:\/\/<\/em><\/em>doi.org\/10.3389\/fmars.2023.1178548<\/a><\/em><\/p>\n\n\n\n<p>Ross, C.H., Runge, J.A., Roberts, J.J., Brady, D.C., Tupper, B., &amp; Record, N.R. (2023) Estimating North Atlantic right whale prey based on <em>Calanus finmarchicus<\/em> thresholds. <em>Marine Ecology Progress Series. <a href=\"https:\/\/doi.org\/10.3354\/meps14204\"><em><em>https:\/\/<\/em><\/em>doi.org\/10.3354\/meps14204<\/a><\/em><\/p>\n\n\n\n<p>Friedland, K.D., Adams, E.M., Goetsch, C., Gulka, J., Brady, D.C., Rzeszowski, E., Crear, D.P., Gaichas, S., Gill, A.B., McManus, M.C., Methratta, E., T., Morano, J.L., &amp; Staudinger, M. (2023) Forage fish species prefer habitat within designated offshore wind energy areas on the US Northeast Shelf ecosystem. <em>Marine and Coastal Fisheries. <a href=\"https:\/\/doi.org\/10.1002\/mcf2.10230\"><em><em>https:\/\/<\/em><\/em>doi.org\/10.1002\/mcf2.10230<\/a><\/em><\/p>\n\n\n\n<p>Friedland, K.D., Record, N., Pendleton, D. Balch, W., Stamieszkin, K., Moisan, J., &amp; Brady, D.C. (2023) Asymmetry in the rate of warming and the phenology of seasonal blooms in the Northeast US Shelf Ecosystem. <em>ICES Journal of Marine Science. <em><em>https:\/\/<\/em><\/em>doi.org\/10.1093\/icesjms\/fsad007<\/em><\/p>\n\n\n\n<p>Craig, J.K., Huebert, K.B., Rose, K.A., Rice, J.A., &amp; Brady, D.C. (2023) Searching for Oxygen: Dynamic Movement Responses of Juvenile Spot (<em>Leiostomus xanthurus<\/em>) in an Intermittently Hypoxic Estuary. <em>Estuaries and Coasts.<\/em> <em><em>https:\/\/<\/em>doi.org\/10.1007\/s12237-022-01167-6<\/em><\/p>\n\n\n\n<p>Tian, R., Cai, X., Testa, J.M., Brady, D.C., Cerco, C.F., Linker, L. (2023) Simulation of high-frequency dissolved oxygen dynamics in a shallow estuary, the Corsica River, Chesapeake Bay. <em>Frontiers in Marine Science <em>https:\/\/<\/em><\/em>doi.org\/10.3389\/fmars.2022.1058839<\/p>\n\n\n\n<p>Coleman, S., Dewhurst, T., Frediksson, D.W., St. Gelais, A., Cole, K., MacNicoll, M., Laufer, E., &amp; Brady, D.C. (2022) Quantifying baseline costs and cataloging potential optimization strategies for kelp aquaculture carbon dioxide removal. <em>Frontiers in Marine Science<\/em>. <em><em>https:\/\/<\/em>doi.org\/10.3389\/fmars.2022.966304<\/em><\/p>\n\n\n\n<p>Coleman, S., St. Gelais, A., Fredriksson, D., Dewhurst, T., &amp; Brady, D.C. (2022) Identifying scaling pathways and research priorities for kelp aquaculture nurseries using a techno-economic modeling approach. <em>Frontiers in Marine Science. <em><em>https:\/\/<\/em><\/em>doi.org\/10.3389\/fmars.2022.894461<\/em><\/p>\n\n\n\n<p>Leeman, C., Martin, E., Coleman, S., Gray, M.W. &amp; Brady, D.C. (2022) The potential socio-environmental advantages of repurposing lobster impoundments for eastern oyster (<em>Crassostrea virginica<\/em>) aquaculture. <em>Aquaculture. 554: 738130. https:\/\/doi.org\/10.1016\/j.aquaculture.2022.738130<\/em><\/p>\n\n\n\n<p>Jiang, B., Boss, E., Kiffney, T.J., Hesketh, G., Bourdin, G., Fan, D., &amp; Brady, D.C. (2022) Oyster aquaculture site selection using high resolution remote sensing: A case study in the Gulf of Maine, USA. <em>Frontiers in Marine Sciences<\/em>. <em><em>https:\/\/<\/em>doi.org\/10.3389\/fmars.2022.802438<\/em><\/p>\n\n\n\n<p>Friedland, K.D., Miles, T., Goode, A.G., Powell, E.N., &amp; Brady, D.C. (2022) The Middle Atlantic Bight Cold Pool is warming and shrinking: indices from <em>in situ<\/em> autumn seafloor temperatures. <em>Fisheries Oceanography. https:\/\/doi.org\/10.1111\/fog.12573<\/em><\/p>\n\n\n\n<p>Both, A., C. J. Byron, D. C. Brady, B. Costa-Pierce, L. M. Mayer and C. C. Parrish (2022) Solubilization of nutritional lipids from three coastal and estuarine primary producers using sodium taurocholate as a model surfactant to mimic typical consumer gut-fluids. <em>Journal of Experimental Marine Biology and Ecology<\/em> 548: 151686. <em>https:\/\/doi.org\/10.1016\/j.jembe.2021.151686<\/em><\/p>\n\n\n\n<p>Farr, E.R., Johnson, M.R., Nelson, M.W., Hare, J.A., Morrison, W.E., Lettrich, M.D., Vogt, B., Meaney, M., Howson, U.A., Auster, P.J., Borsuk, F.A., Brady, D.C., Cashman, M.J., Colarusso, P. Grabowski, J.H., Hawkes, J.P., Mercaldo-Allen, R., Packer, D.B., Stevenson, D.K. (2021) An assessment of marine, estuarine, and riverine habitat vulnerability to climate change in the Northeast U.S. <em>PLoS ONE 16(12): e0260654. <\/em><a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0260654\"><em>https:\/\/doi.org\/10.1371\/journal.pone.0260654<\/em><\/a><em><u><\/u><\/em><\/p>\n\n\n\n<p>*Highlighted by NOAA: https:\/\/www.fisheries.noaa.gov\/feature-story\/study-assesses-vulnerability-coastal-habitats-climate-change-northeast-united-states<\/p>\n\n\n\n<p>Coleman, S., Morse, D., Brayden, W.C., &amp; Brady, D.C. (2021) Developing a bioeconomic framework for scallop culture optimization and product development. <em>Aquaculture Economics &amp; Management <a href=\"https:\/\/doi.org\/10.1080\/13657305.2021.2000517\">https:\/\/doi.org\/10.1080\/13657305.2021.2000517<\/a><\/em><\/p>\n\n\n\n<p>Liberti, C.M., Gray, M.W., Mayer, L., Testa, J.M., Liu, W. &amp; Brady, D.C. (2021) Auto-acidification: Examining the effects of oyster aquaculture on estuarine carbonate carrying capacity. <em>Elementa: Special Issue on the Gulf of Maine 2050<\/em> <em>10 (1): 00057. <a href=\"https:\/\/doi.org\/10.1525\/elementa.2020.00057\">https:\/\/doi.org\/10.1525\/elementa.2020.00057<\/a><\/em><\/p>\n\n\n\n<p>Stevens, J. R., J. M. Jech, G. B. Zydlewski and D. C. Brady (2021). Estimating target strength of estuarine pelagic fish assemblages using fisheries survey data. <em>The Journal of the Acoustical Society of America<\/em> 150(4): 2553-2565. <em><a href=\"https:\/\/doi.org\/10.1121\/10.0006449\">https:\/\/doi.org\/10.1121\/10.0006449<\/a><\/em><\/p>\n\n\n\n<p>Hillyer, G., Liu, W., McGreavy, B., Melvin, G., &amp; Brady, D.C. (2021) Using a stakeholder-engaged approach to understand and address bacterial transport on soft-shell clam flats. <em>Estuaries and Coasts. <em><em>https:\/\/<\/em><\/em>doi.org\/10.1007\/s12237-021-00997-0<\/em><\/p>\n\n\n\n<p>*Featured in Coastal and Estuarine Science News (CESN): <a href=\"https:\/\/cerf.memberclicks.net\/cesn-november-2021\">https:\/\/cerf.memberclicks.net\/cesn-november-2021<\/a><\/p>\n\n\n\n<p>Coleman, S., T. Kiffney, K. R. Tanaka, D. Morse and D. C. Brady (2021). Meta-analysis of growth and mortality rates of net cultured sea scallops across the Northwest Atlantic. <em>Aquaculture. <em><em>https:\/\/<\/em><\/em>doi.org\/10.1016\/j.aquaculture.2021.737392<\/em><\/p>\n\n\n\n<p>Gassett, P.R., O\u2019Brien-Clayton, K., Bastidas, C., Rheuban, J.E., Hunt, C.W., Turner, E., Liebman, M., Silva, E., Pimenta, A.R., Grear, J., Motyka, J., McCorkle, D., Stancioff, E., Brady, D.C., &amp; Strong, A.L. (2021) Community science for coastal acidification monitoring and research. <em>Coastal Management. <em>https:\/\/<\/em>doi.org\/10.1080\/08920753.2021.1947131<\/em><\/p>\n\n\n\n<p>Pershing, A., Alexander, M., Brady, D.C., Brickman, D., Curchitser, E., Diamond, T., McClenachan, L., Mills, K.E., Nichols, O.C., Pendleton, D., Record, N.R., Scott, J., Staudinger, M.D., &amp; Wang, Y. (2021) Climate Impacts in the Gulf of Maine Ecosystem: A Review of Observed and Expected Changes in 2050 from Rising Temperatures. <em>Elementa: Special Issue on the Gulf of Maine 2050. <\/em>9 (<em>1<\/em>): 00076<em>. <a href=\"https:\/\/doi.org\/10.1525\/elementa.2020.00076\">https:\/\/doi.org\/10.1525\/elementa.2020.00076<\/a><\/em><\/p>\n\n\n\n<p>Hood, R.R., Shenk, G.W., Dixon, R.L., Smith, S.M.C., Ball, W.P., Bash, J.O., Batiuk, R.,&nbsp; Boomer, K., Brady, D.C., Cerco, C., Claggett, P., de Mutsert, K., Easton, Z.M., Elmore, A.J., Friedrichs, M.A.M, Harris, L.A., Ihde, T.F., Lacher, I., Li, L., Linker, L.C., Miller, A., Moriarty, J., Noe, G.B., Onyullo, G., Rose, K., Skalak, K., Tian, R., Veith, T.L., Wainger, L., Weller, D., Zhang, Y.J. (2021) The Chesapeake Bay Program Modeling System: Overview and Recommendations for Future Development. <em>Ecological Modelling<\/em> 456<em>: <\/em>109635<em>.<\/em> <em>doi.org\/10.1016\/j.ecolmodel.2021.109635<\/em><\/p>\n\n\n\n<p>Friedland, K. D., J. R. Moisan, A. A. Maureaud, D. C. Brady, A. J. Davies, S. J. Bograd, R. A. Watson and Y. Rousseau (2021). Trends in phytoplankton communities within large marine ecosystems diverge from the global ocean. <em>Canadian Journal of Fisheries and Aquatic Sciences<\/em> 78(11): 1689-1700.<a href=\"https:\/\/doi.org\/10.1139\/cjfas-2020-0423\"><em>https:\/\/doi.org\/10.1139\/cjfas-2020-0423<\/em><\/a><em> *<\/em><\/p>\n\n\n\n<p><sup>* <\/sup>Editor\u2019s Choice<\/p>\n\n\n\n<p>Grebe, G., Byron, C., Brady, D.C., St. Gelais, A., &amp; Costa-Pierce, B (2021) The effect of distal-end trimming on <em>Saccharina latissima<\/em> morphology, composition, and productivity. <em>Journal of the World Aquaculture Society<\/em> 1-18<em>. doi:10.1111\/jwas.12814<\/em><\/p>\n\n\n\n<p>Newell, C.R., Hawkins, A.J.S., Morris, K., Boss, E., Thomas, A.C., Kiffney, T.J., &amp; Brady, D.C. (2021) Using high resolution remote sensing to characterize suspended particulate organic matter as bivalve food for aquaculture site selection. <em>Journal of Shellfish Research. <\/em>40(1): 113-118. <em>https:\/\/doi.org\/10.2983\/035.040.0110<\/em><\/p>\n\n\n\n<p>Siedlecki, S.A., Salisbury, J., Gledhill, D.K., Bastidas, C., Meseck, S., McGarry, K., Hunt, C.W., Alexander, M., Lavoie, D., Wang, Z.A., Scott, J., Brady, D.C., Mlsna, I., Azetsu-Scott, K., Liberti, C.M., Melrose, D.C., White, M., Pershing, A., Vandemark, D., Townsend, D.W., Chen, Changsheng, Mook, W., &amp; Morrison, R. (2021) Projecting ocean acidification impacts for the Gulf of Maine to 2050: New tools and expectations. <em>Elementa: Special Issue on the Gulf of Maine 2050 doi.org\/10.1525\/elementa.2020.00062<\/em><\/p>\n\n\n\n<p>Testa, J.M., Basenback, N., Shen, C., Cole, K., Moore, A., Hodgkins, C., &amp; Brady, D.C. (2021) Modeling impacts of nutrient loading, warming, and boundary exchanges on hypoxia and metabolism in a shallow estuarine ecosystem. <em>Journal of the American Water Resources Association (JAWRA) doi.org\/10.1111\/1752-1688.12912<\/em><\/p>\n\n\n\n<p>Coleman, S., Cleaver, C., Morse, D., Brady, D.C. &amp; Kiffney, T. (2021) The coupled effects of stocking density and temperature on Sea Scallop (<em>Placopecten magellanicus<\/em>) growth in suspended culture. <em>Aquaculture Reports. <\/em>20: 100684. <em>https:\/\/doi.org\/10.1016\/j.aqrep.2021.100684<\/em><\/p>\n\n\n\n<p>Friedland, K.D., Methratta, E., Gill, A., Gaichas, S., Curtis, T., Adams, E., Morano, J., Crear, D., McManus, C., &amp; Brady, D.C. (2021) Resource Occurrence and Productivity in Existing and Proposed Wind Energy Lease Areas on the US Northeast Shelf. <em>Frontiers in Marine Science doi.org\/10.3389\/fmars.2021.629230<\/em><\/p>\n\n\n\n<p>Lewis, K.A., Rose, K.A., DeMutsert, K., Sable, S., Ainsworth, C., Brady, D.C., &amp; Townsend, H. (2021) Using multiple ecological models to inform environmental decision-making. <em>Frontiers in Marine Science. <\/em>8<strong>: <\/strong>283<em> doi.org\/10.3389\/fmars.2021.625790<\/em><\/p>\n\n\n\n<p>Grebe, G. S., C. J. Byron, D. C. Brady, A. H. Geisser and K. D. Brennan (2021). The nitrogen bioextraction potential of nearshore <em>Saccharina latissima<\/em> cultivation and harvest in the Western Gulf of Maine. <em>Journal of Applied Phycology<\/em> 33(3): 1741-1757. <em>https:\/\/doi.org\/10.1007\/s10811-021-02367-6<\/em><\/p>\n\n\n\n<p>Goode, A. G., J. H. Grabowski and D. C. Brady (2021). Evaluating benthic impact of the Gulf of Maine lobster fishery using the swept area seabed impact (SASI) model. <em>Canadian Journal of Fisheries and Aquatic Sciences<\/em> <em>doi:10.1139\/cjfas-2020-0305<\/em>.<\/p>\n\n\n\n<p>Both, A., Byron, C.J., Costa-Pierce, B., Parrish, C.C., &amp; Brady, D.C. (2020) Detrital Subsidies in the Diet of <em>Mytilus edulis<\/em>; Macroalgal Detritus Likely Supplements Essential Fatty Acids. <em>Frontiers of Marine Sciences <\/em>7:561073<em> doi.org\/10.3389\/fmars.2020.561073<\/em><\/p>\n\n\n\n<p>Friedland, K.D., Morse, R.E., Shackell, N., Tam, J., Morano, J.L., Moisan, J.R., &amp; Brady, D.C. Changing Physical Conditions and Lower and Upper Trophic Level Responses on the US Northeast Shelf. (2020) <em>Frontiers in Marine Science<\/em> <em>doi.org\/10.3389\/fmars.2020.567445<\/em><\/p>\n\n\n\n<p>Rheuban, J.E., Gassett, P.R., McCorkle, D.C., Hunt, C., Liebman, M.L., Bastidas, C., O&#8217;Brien-Clayton, K., Pimenta, A.R., Silva, E., Vlahos, P., Woosley, R.J.J., Ries, J., Liberti, C.M., Grear, J., Salisbury, J., Brady, D.C., Guay, K., LaVigne, M., Strong, A.L., Stancioff, E., Turner, E. (2020) Synoptic assessment of coastal total alkalinity through community science. <em>Environmental Research Letters. <\/em>16 024009 <em>doi.org\/10.1088\/1748-9326\/abcb39<\/em><\/p>\n\n\n\n<p>Bricknell, I.; Birkle, S.; Van Kirk, T. Hamlin, H.; Duffy, K.; Brawley, S.; Capistrant-Fossa, K.; Hugenard, K.; Byron, C.; Van Walsum, P.;&nbsp; Liu , Z.; Zhu , L. ; Johnson, T.; Grebe, G.; Taccardi, E.; Miller, M.; Preziosi, B.; Brady, D.C.; Bowden, T.; Quigley, C.; Moeykens, Cold water aquaculture resilience, a review of the impact of likely scenarios in a climate change vulnerable ecological system (2020) <em>Reviews in Aquaculture. doi:10.1111\/raq.12483<\/em><\/p>\n\n\n\n<p>Beard, K., Kimble, M., Yuan, J., Evans, K.S., Liu, W., Brady, D.C., Moore, S. (2020) A method for heterogeneous spatio-temporal data integration in support of marine aquaculture site selection. <em>Journal of Marine Science and Engineering<\/em>. 8 (2): 96-111<\/p>\n\n\n\n<p>Wang, Z., Chai, F., &amp; Brady, D.C. (2020) Development of a New Sediment Flux Model &#8211; Application in Chesapeake Bay. <em>Progress in Oceanography. <\/em>185, 102332 <em>doi.org\/10.1016\/j.pocean.2020.102332<\/em><\/p>\n\n\n\n<p>*Friedland, K.D., Morse, R.E., Manning, J.P., Melrose, D.C., Miles, T., Goode, A.G., Brady, D. C., &nbsp;Kohut, J.T., Powell, E.N. (2020) Trends and change points in surface and bottom thermal environments of the US Northeast Continental Shelf Ecosystem. <em>Fisheries Oceanography<\/em>. 00: 1-19 <em>doi.org\/10.1111\/fog.12485<\/em><\/p>\n\n\n\n<p><em>* Wiley Top Cited Paper in Fisheries Oceanography 2020-2021<\/em><\/p>\n\n\n\n<p>Scherelis, C., Zydlewski, G.B. &amp; Brady, D.C. (2019) Relating fluctuations in fish abundance to dam removal and environmental conditions in the Penobscot River, Maine, using hydroacoustics. <em>River Research and Applications <\/em>36: 234-246<em> doi:10.1002\/rra.3560<\/em><\/p>\n\n\n\n<p>Adams, C.M., Mayer, L., Rawson, P., Brady, D.C., &amp; Newell, C. (2019) Detrital protein contribution to oyster nutrition and growth in the Damariscotta estuary, Maine, USA. <em>Aquaculture Environmental Interactions<\/em> 11: 521-536 <em>doi:10.3354\/aei00330<\/em><\/p>\n\n\n\n<p>Oppenheim, N., Wahle, R., Brady, D.C., Goode, A. &amp; Pershing, A. (2019) Forecasting fishery trends in a warming ocean: A modeling framework using early life stages of the American lobster. <em>Ecological Applications. <\/em>29(8), e02006 1-10<em> doi:<\/em><a href=\"http:\/\/qq4nm4zz3u.search.serialssolutions.com\/?__char_set=utf8&amp;id=doi:10.1002\/eap.2006&amp;sid=libx&amp;genre=article\"><em>10.1002\/eap.2006<\/em><\/a><\/p>\n\n\n\n<p>Goode, A., Brady, D.C., Steneck, R., &amp; Wahle, R. (2019) The brighter side of climate change: Ocean warming crosses a biological threshold to amplify an iconic fishery. <em>Global Change Biology <\/em>25: 3906\u2013 <em>3917 doi:10.1111\/gcb.14778<\/em><\/p>\n\n\n\n<p>Johnson, T.R., Beard, K., Brady, D.C., Byron, C.J., Cleaver, C., Duffy, K., Keeney, N., Kimble, M., Miller, M., Moeykens, S., Teisl, M., van Walsum, G.P., Yuan, J. (2019) A social-ecological systems framework to guide marine aquaculture research. <em>Sustainability<\/em> 11(9): 2522 <em>doi:10.3390\/su11092522<\/em><\/p>\n\n\n\n<p>Staples, K. W., Chen, Y., Townsend, D. W. &amp; Brady, D. C. (2019) Spatiotemporal variability in the phenology of the initial intra-annual molt of American lobster (<em>Homarus americanus<\/em> Milne Edwards, 1837) and its relationship with bottom temperatures in a changing Gulf of Maine. <em>Fisheries Oceanography<\/em> 28: 468-485 <em>doi:10.1111\/fog.12425<\/em><\/p>\n\n\n\n<p>Gray, M. W., Chaparro, O., Huebert, K. B., O&#8217;Neill, S. P., Couture, T., Moreira, A., &amp; Brady, D. C. (2019). Life history traits conferring larval resistance against ocean acidification: The case of brooding oysters of the Genus Ostrea. <em>Journal of Shellfish Research<\/em>, 38(3), 751-761. <em>doi.org\/10.2983\/035.038.0326<\/em><\/p>\n\n\n\n<p>Bayer, S.R., Wahle, R.A., <strong>Brady, D.C.,<\/strong> Jumars, P.A., Stokesbury, K.D.E., &amp; Carey, J.D. (2018) Fertilization dynamics in scallop aggregations: reconciling model predictions with field measurements. <em>Ecosphere. <\/em>9(8), e02359.<\/p>\n\n\n\n<p>Testa, J.M., <strong>Brady, D.C.,<\/strong> Murphy, R., &amp; Kemp, W.M. (2018) Nutrient- and climate-induced shifts in the phenology of linked biogeochemical cycles in a temperate estuary. <em>Frontiers in Marine Science. 5<\/em>(114), 1-15<em> doi:10.3389\/fmars.2018.00114.<\/em><\/p>\n\n\n\n<p>Friedland, K.D., Mouw, C.B., Asch, R.G., Ferreira, A.S.A., Henson, S., Hyde, K.J., Morse, R.E., Thomas, A.C., &amp; <strong>Brady, D.C.<\/strong> (2018) Phenology and time series trends of the dominant seasonal phytoplankton bloom across global scales. <em>Global Ecology and Biogeography <\/em><em>27<\/em>(5), 551-569 <em>doi:10.1111\/geb.12717<\/em>.<\/p>\n\n\n\n<p>*Snyder, J., Boss, E., Weatherbee, R., Thomas, A., <strong>Brady, D.C.<\/strong>, and Newell, C. (2017) Oyster aquaculture site selection using Landsat 8-derived sea surface temperature, turbidity, and chlorophyll a. <em>Frontiers in Marine Science 4<\/em>(190), 1-11 <em>doi:10.3389\/fmars.2017.00190<\/em>.<\/p>\n\n\n\n<p><em>*Publication Highlighted by NASA: <\/em><a href=\"https:\/\/landsat.gsfc.nasa.gov\/oyster-prospecting-with-landsat-8\/\"><em>https:\/\/landsat.gsfc.nasa.gov\/oyster-prospecting-with-landsat-8\/<\/em><\/a><em> &amp; <\/em><a href=\"https:\/\/earthobservatory.nasa.gov\/IOTD\/view.php?id=90777&amp;src=i\" target=\"_blank\" rel=\"noreferrer noopener\"><em>https:\/\/earthobservatory.nasa.gov\/IOTD\/view.php?id=90777&amp;src=i<\/em><\/a><\/p>\n\n\n\n<p>*Du Clos, K.T., Jones, I.T.,&nbsp;Carrier, T.J., <strong>Brady, D.C.<\/strong>, and Jumars, P.A. (2017) Model-assisted measurements of suspension-feeding flow velocities. <em>Journal of Experimental Biology<\/em> 220: 2096-2107.<\/p>\n\n\n\n<p><em>*Highlighted photo winner in the JEB 2018 Calendar<\/em><\/p>\n\n\n\n<p>Frederick, C., <strong>Brady, D.C.<\/strong>, &amp; Bricknell, I. (2017) Landing strips: Model development for estimating body surface area of farmed Atlantic salmon (<em>Salmo salar<\/em>). <em>Aquaculture 473<\/em>: 299-302.<\/p>\n\n\n\n<p>Li, B., Tanaka, K.R., Chen, Y., Brady, D.C., &amp; Thomas, A.C. (2017) Assessing the quality of modeled bottom water temperatures from the Finite-Volume Community Ocean Model (FVCOM) in the Northwest Atlantic Region. <em>Journal of Marine Systems. 173<\/em>: 21-30.<\/p>\n\n\n\n<p>McHenry, J., Steneck, R., &amp; <strong>Brady, D.C.<\/strong> (2017) Abiotic proxies for predictive mapping of near-shore benthic assemblages: Implications for marine spatial planning. <em>Ecological Applications 27<\/em><strong>: <\/strong>603-618.<\/p>\n\n\n\n<p>Brewer, J., Springuel, N., Wilson, J., Alden, R., Morse, D., Schmitt, C., Bartlett, C., Johnson, T., Guenther, C., &amp; <strong>Brady, D.C.<\/strong> (2016). Engagement in a Public Forum: Knowledge, Action, and Cosmopolitanism. <em>Antipode<\/em>, <em>49<\/em>: 273-293.<\/p>\n\n\n\n<p>Bayer, S. R.<em><sup>a<\/sup><\/em>, Wahle, R.A., Jumars, P.A., &amp; <strong>Brady, D.C.<\/strong> (2016). Measuring scallop fertilization success in the field: chamber design and tests. <em>Marine Ecology Progress Series<\/em> <em>551<\/em>:141-154.<\/p>\n\n\n\n<p>*Lasley-Rasher, R., <strong>Brady, D.C.<\/strong>, Smith, B. &amp; Jumars, P.A. (2015). It takes guts to locate mobile crustacean prey. <em>Marine Ecology Progress Series<\/em>. <em>538<\/em>: 1-12.<\/p>\n\n\n\n<p><em>*Featured Article in MEPS Volume 538<\/em><\/p>\n\n\n\n<p>Testa, J.M., <strong>Brady, D.C.<\/strong>, Cornwell, J.C., Owens, M.S., Sanford, L.P., Newell, R.I.E., Newell, C.R., Richardson, J. &amp; Suttles, S.E. (2015) Modeling the impact of floating oyster aquaculture on sediment-water nutrient and oxygen fluxes. <em>Aquaculture Environment Interactions, 7<\/em>: 205-222.<\/p>\n\n\n\n<p>Zhang, Q., <strong>Brady, D.C.<\/strong>, Boynton, W.R., &amp; Ball, W.P. (2015) Long-term trends of nutrients and sediment from the non-tidal Chesapeake watershed: An assessment of progress by river and season. <em>Journal of the American Water Resources Association, <\/em><em>51<\/em>(6): 1534-1555.<\/p>\n\n\n\n<p>Grieve C, <strong>Brady D.C<\/strong>.,&amp; Polet H (2015) Best practices for managing, measuring and mitigating the benthic impacts of fishing &#8211; Part 2. <em>Marine Stewardship Council Science Series<\/em> <em>3<\/em>: 81 \u2013 120.<\/p>\n\n\n\n<p>Grieve, C., <strong>Brady, D.C.<\/strong>,and Polet, H. (2014) Best practices for managing, measuring, and mitigating the benthic impact of fishing &#8211; Part 1. <em>Marine Stewardship Council Science Series<\/em> <em>2<\/em>: 18-88<\/p>\n\n\n\n<p>Testa, J.M., Li, Y., Lee, Y., Li, M., <strong>Brady, D.C.<\/strong>,Di Toro, D.M., &amp; Kemp, W.M. (2014) Quantifying the effects of nutrient loading on dissolved O<sub>2<\/sub> cycling and hypoxia in Chesapeake Bay using a coupled hydrodynamic-biogeochemical model. <em>Journal of Marine Systems, 139<\/em>: 139-158.<\/p>\n\n\n\n<p>Grieve, C., <strong>Brady, D.C.<\/strong>, &amp; Polet, H. (2014) Best practices for managing, measuring, and mitigating the benthic impacts of fishing \u2013 Part 1. <em>Marine Stewardship Council Science Series<\/em> <em>2<\/em>: 18-88. (Cited by the Institute for European Environmental Policy: Allocating fishing opportunities using environmental criteria and being proposed as the guide for determining impact as a criterion for allocating quota)<\/p>\n\n\n\n<p><strong>Brady, D.C.<\/strong> &amp; Targett, T.E. (2013) Movement of juvenile weakfish (<em>Cynoscion regalis<\/em>) and spot (<em>Leiostomus xanthurus<\/em>) in relation to diel-cycling hypoxia in an estuarine tributary: Assessment using acoustic telemetry. <em>Marine Ecology Progress Series, 491<\/em>: 199-219.<\/p>\n\n\n\n<p><strong>Brady, D.C.<\/strong>, Testa, JM., Di Toro, D.M., Boynton, W.R., &amp; Kemp, W.M. (2013) Sediment Flux Modeling: Application and validation for coastal systems. <em>Estuarine, Coastal, and Shelf Science 117<\/em>: 107-124.<\/p>\n\n\n\n<p>Testa, J.M., <strong>Brady, D.C.<\/strong>, Di Toro, D.M., Boynton, W.R., Cornwell, J.C., &amp; Kemp, W.M. (2013) Sediment Flux Modeling: Simulating nitrogen, phosphorus, and silica cycles. <em>Estuarine, Coastal and Shelf Science<\/em>, <em>131<\/em>: 245-263.<\/p>\n\n\n\n<p>McMahan, M.D., <strong>Brady, D.C.<\/strong>, Cowan, D.F., Grabowski, J.H., &amp; Sherwood, G.D. (2013) Using acoustic telemetry to observe the effects of a groundfish predator (Atlantic cod, <em>Gadus morhua<\/em>) on movement of the American lobster (<em>Homarus americanus<\/em>). <em>Canadian Journal of Fisheries and Aquatic Sciences,<\/em> <em>70<\/em>: 1625-1634.<\/p>\n\n\n\n<p>Zhang, Q., <strong>Brady, D.C.<\/strong>, &amp; Ball, W.P. (2013) Long-term seasonal trends of nitrogen, phosphorus, and suspended sediment load from the non-tidal Susquehanna River Basin to Chesapeake Bay. <em>Science of the Total Environment<\/em>, <em>452-453<\/em>: 208-221.<\/p>\n\n\n\n<p>Brady, D.C. &amp; Targett, T.E. (2010) Characterizing the escape response of air-saturation and hypoxia-acclimated juvenile summer flounder (<em>Paralichthys dentatus<\/em>) to diel-cycling hypoxia. <em>Journal of Fish Biology, 77<\/em>(1): 137-152.<\/p>\n\n\n\n<p>Breitburg, D.L., Craig, J.K., Fulford, R.S., Rose, K.A., Boynton, W.R., <strong>Brady, D.C.<\/strong>, Ciotti, B.J., Diaz, R.J., Friedland, K.D., Hagy, J.D. III, Hart, D.R., Hines, A.H., Houde, E.D., Kolesar, S.E., Nixon, S.W., Rice, J.A., Secor, D.H., &amp; Targett, T.E. (2009) Nutrient enrichment and fisheries exploitation: interactive effects on estuarine living resources and their management. <em>Hydrobiologia,<\/em> <em>629<\/em>(1): 31-47.<\/p>\n\n\n\n<p>Tyler, R.M., <strong>Brady, D.C.<\/strong>, &amp; Targett, T.E. (2009) Temporal and spatial dynamics of diel-cycling dissolved oxygen in estuarine tributaries. <em>Estuaries and Coasts. 32<\/em>(1): 123-145.<\/p>\n\n\n\n<p><strong>Brady, D.C.<\/strong>, Tuzzolino, D.M., &amp; Targett, T.E. (2009) Behavioral responses of juvenile weakfish, <em>Cynoscion regalis<\/em>, to diel-cycling hypoxia: swimming speed, angular correlation, expected displacement and effects of hypoxia acclimation. <em>Canadian Journal of Fisheries and Aquatic Sciences. 66<\/em>(3): 415-424.<\/p>\n\n\n\n<p>Fennel, K., <strong>Brady, D.C.<\/strong>, Di Toro, D.M., Fulweiler, R., Gardner, W.S., Giblin, A., McCarthy, M.J., Rao, A., Seitzinger, S., Thouvenot-Korppoo, &amp; Tobias, C. (2009) Modeling denitrification in aquatic sediments. <em>Biogeochemistry. 93<\/em>(1-2): 159-178.<\/p>\n\n\n\n<p>CBEO Project Team: Ball, W.P., <strong>Brady, D.C.<\/strong>, Brooks, M.T., Burns, R, Cuker, B.E., Di Toro, D.M., Gross, T.F., Kemp, W.M., Murray, L., Murphy, R.R., Perlman, E., Piasecki, M., Testa, J.M., &amp; Zaslavsky, I. (2008) Prototype system for multi-disciplinary shared cyberinfrastructure: Chesapeake Bay Environmental Observatory (CBEO). <em>Journal of Hydrologic Engineering, ASCE<\/em>. <em>13<\/em>(10): 960-970.<\/p>\n<\/div><\/div><\/div><\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-ugb-accordion ugb-accordion ugb-9606cc5 ugb-accordion--v2 ugb-accordion--design-basic ugb-accordion--single-open ugb-main-block\" aria-expanded=\"false\"><style>.ugb-9606cc5 .ugb-accordion__heading{border-style:solid !important;border-color:#000000 !important;border-top-width:1px !important;border-right-width:1px !important;border-bottom-width:1px !important;border-left-width:1px !important}.ugb-9606cc5 .ugb-accordion__title{font-size:20px !important}<\/style><div class=\"ugb-inner-block\"><div class=\"ugb-block-content\"><div class=\"ugb-accordion__item\"><div class=\"ugb-accordion__heading ugb--shadow-5\" role=\"button\" tabindex=\"0\"><h4 class=\"ugb-accordion__title\"><strong>Book Chapters<\/strong><\/h4><svg xmlns=\"http:\/\/www.w3.org\/2000\/svg\" viewBox=\"0 0 20 20\" class=\"ugb-accordion__arrow\" width=\"20\" height=\"20\"><path d=\"M16.7 3.3L10 10 3.3 3.4 0 6.7l10 10v-.1l10-9.9z\"><\/path><\/svg><\/div><div class=\"ugb-accordion__content\" role=\"region\"><div class=\"ugb-accordion__content-inner\">\n<p>Newell, C.R., <strong>Brady, D.C.,<\/strong> &amp; Richardson, J. (2018) Chapter 24 Farm-scale production models. Chapter in <em>The G+S Book: Goods and Services of Marine Bivalves<\/em>. Springer.<\/p>\n\n\n\n<p>Testa, J. M., Y. Li, Y. J. Lee, D. C. <strong>Brady, D<\/strong>.<strong>C.<\/strong> M. Di Toro, and W. M. Kemp. (2017). Modeling physical and biogeochemical controls on dissolved oxygen in Chesapeake Bay: Lessons learned from simple and complex approaches. <em>in<\/em> D. Justic, K. Rose, R. Hetland, and K. Fennel, editors. Modeling Coastal Hypoxia: Numerical Simulations of Patterns, Controls and Effects of Dissolved Oxygen Dynamics. Springer-Verlag. Pp. 95-118<\/p>\n<\/div><\/div><\/div><\/div><\/div><\/div>\n\n\n\n<div class=\"wp-block-ugb-accordion ugb-accordion ugb-21af208 ugb-accordion--v2 ugb-accordion--design-basic ugb-accordion--single-open ugb-main-block\" aria-expanded=\"false\"><style>.ugb-21af208 .ugb-accordion__heading{border-style:solid !important;border-color:#000000 !important;border-top-width:1px !important;border-right-width:1px !important;border-bottom-width:1px !important;border-left-width:1px !important}.ugb-21af208 .ugb-accordion__title{font-size:20px !important}<\/style><div class=\"ugb-inner-block\"><div class=\"ugb-block-content\"><div class=\"ugb-accordion__item\"><div class=\"ugb-accordion__heading ugb--shadow-5\" role=\"button\" tabindex=\"0\"><h4 class=\"ugb-accordion__title\"><strong>Peer Reviewed Reports Targeting Specific Management Actions<\/strong><\/h4><svg xmlns=\"http:\/\/www.w3.org\/2000\/svg\" viewBox=\"0 0 20 20\" class=\"ugb-accordion__arrow\" width=\"20\" height=\"20\"><path d=\"M16.7 3.3L10 10 3.3 3.4 0 6.7l10 10v-.1l10-9.9z\"><\/path><\/svg><\/div><div class=\"ugb-accordion__content\" role=\"region\"><div class=\"ugb-accordion__content-inner\">\n<p><strong>Brady, D.C<\/strong>., J.V. DePinto, S.C. Chapra, D.M. Di Toro, M.A.M. Friedrichs, M.W. Gray, T. Jordan, M. Xia. (2018) Scientific and Technical Advisory Committee Chesapeake Bay Water Quality and Sediment Transport Model (WQSTM) Review. STAC Publication Number 18-002, Edgewater, MD. 40 pp.<\/p>\n\n\n\n<p>Ball, W.P., B.D Michael, D.C. Brady, J.L. Martin, S.H. Scott, and P.R. Wilcock (2017) Lower Susquehanna River Reservoir System Model Enhancements Peer Review. CRC Publication No. 17-173, Chesapeake Research Consortium, Edgewater, MD. 59 pp.<\/p>\n\n\n\n<p><strong>Brady, D.C. <\/strong>&amp; Di Toro, D.M. (2015) Can TMDL Models Reproduce the Nutrient Loading-Hypoxia Relationship? Water Environmental Research Federation (WERF) Final Report No. U4R09<\/p>\n\n\n\n<p>Fitzpatrick, J., <strong>Brady, D.C.<\/strong>, De Pinto, J., Di Toro, D.M., Kemp, W.M., Scavia, D. (2015) Scenario-Based Forecasts in Support of Regional Coastal Management: Concepts of Operation. White Paper Prepared for NOAA\/NOS National Centers of Coastal Ocean Science<\/p>\n\n\n\n<p>Brady, D.C. (Environmental Monitoring Team Lead), and Environmental Monitoring Team (2015). Environmental Monitoring Report for VolturnUS Deployment in Castine, ME. Final Report Submitted to the United States Department of Energy. 484 p.<\/p>\n\n\n\n<p><strong>Brady, D.C.<\/strong> (2014). TMDL Model and Data Evaluation for Delaware\u2019s Inland Bays: Modeling Diel-cycling Hypoxia in Delaware\u2019s Inland Bays. Report to the Center for the Inland Bays.<\/p>\n\n\n\n<p>Aikman, F., <strong>Brady, D.C.<\/strong>,Brush, M.J., Burke, P. Cerco, C.F., Fitzpatrick, J.J., He, R., Jacobs, G.A., Kemp, W.M., &amp; Wiggert, J.D. (2014) Modeling approaches for scenario forecasts of Gulf of Mexico hypoxia. <em>Edited by<\/em> D.M. Kidwell, A.J. Lewitus, &amp; E. Turner. White Paper from the Hypoxic Zone Modeling Technical Review Meeting, 17-19 April 2013 at the Mississippi State University Science and Technology Center at NASA\u2019s Stennis Space Center in Mississippi, 46 pp.<\/p>\n<\/div><\/div><\/div><\/div><\/div><\/div>\n\n\n\n<div class=\"alignfull wp-block-ugb-cta ugb-cta ugb-b40f524 ugb-cta ugb-cta--v2 ugb-cta--design-plain ugb-main-block ugb-main-block--inner-wide ugb--has-block-background ugb--has-background-overlay\"><style>.ugb-b40f524 .ugb-cta__title{font-size:25px !important;font-weight:800 !important;color:#000000}.ugb-b40f524 .ugb-button .ugb-button--inner{font-family:\"Lato\",Sans-serif !important;font-size:20px !important}.ugb-b40f524 .ugb-button{background-color:#000000;border-radius:100px !important}.ugb-b40f524 .ugb-button .ugb-button--inner,.ugb-b40f524 .ugb-button svg:not(.ugb-custom-icon){color:#ffffff !important}.ugb-b40f524 .ugb-button:before{border-radius:100px !important}.ugb-b40f524.ugb-cta{background-color:#ffffff;background-image:url(https:\/\/umaine.edu\/bradylab\/wp-content\/uploads\/sites\/582\/2020\/09\/cropped-pexels-matt-hardy-3560168.jpg)}.ugb-b40f524.ugb-cta:before{background-image:linear-gradient(90deg,#ffffff 0%,#ffffff 100%);opacity:0.3}<\/style><div class=\"ugb-inner-block ugb-inner-block--wide\"><div class=\"ugb-block-content\"><div class=\"ugb-cta__item\"><h1 class=\"ugb-cta__title\">Learn about current out research projects<\/h1><div class=\"ugb-button-container\"><a class=\"ugb-button ugb-button--size-small ugb--hover-effect-scale-more\" href=\"https:\/\/umaine.edu\/bradylab\/research-2\/\" rel=\"\" title=\"\"><span class=\"ugb-button--inner\">Take me there!<\/span><\/a><\/div><\/div><\/div><\/div><\/div>\n","protected":false},"excerpt":{"rendered":"<p>View our publications Damian&#8217;s Google Scholar Profile Damian&#8217;s ResearchGate Profile Liberti, C.M., Testa, J.M., Mayer, L.M., Salisbury, J., &amp; Brady, D.C. (in review) The relationship between carbonate chemistry, estuarine metabolism, and spring-neap tidal cycles in a northern temperate estuary. Estuaries and Coasts Jarrett, R.N., Reardon, K., Steneck, R., &amp; Brady, D.C. (major revisions) Multiple independent [&hellip;]<\/p>\n","protected":false},"author":2091,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_kad_blocks_custom_css":"","_kad_blocks_head_custom_js":"","_kad_blocks_body_custom_js":"","_kad_blocks_footer_custom_js":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-1329","page","type-page","status-publish","hentry"],"featured_image_urls_v2":{"full":"","thumbnail":"","medium":"","medium_large":"","large":"","1536x1536":"","2048x2048":"","archive_9_5":"","portrait_3x4":"","image_16_9":"","image_15_7":"","image_25_7":"","3col-image_16_9":"","3col-image_15_7":"","3col-image_full":"","4col-image_16_9":"","4col-image_15_7":"","4col-image_full":"","6col-image_16_9":"","6col-image_15_7":"","6col-image_full":"","8col-image_16_9":"","8col-image_15_7":"","8col-image_full":"","9col-image_16_9":"","9col-image_15_7":"","9col-image_full":"","12col-image_16_9":"","12col-image_15_7":"","12col-image_full":"","post-thumbnail":"","gform-image-choice-sm":"","gform-image-choice-md":"","gform-image-choice-lg":"","umaps-featured-image":"","umaps-icon-size":""},"post_excerpt_stackable_v2":"<p>View our publicationsDamian&#8217;s Google Scholar ProfileDamian&#8217;s ResearchGate Profile Manuscripts in review or revision Liberti, C.M., Testa, J.M., Mayer, L.M., Salisbury, J., &amp; Brady, D.C. (in review) The relationship between carbonate chemistry, estuarine metabolism, and spring-neap tidal cycles in a northern temperate estuary. Estuaries and Coasts Jarrett, R.N., Reardon, K., Steneck, R., &amp; Brady, D.C. (major revisions) Multiple independent indicators of American lobster in Maine: Patterns in space and time. Marine Ecology Progress Series Siedlecki, S.A., Nmor, S., Lessin, G., Kearney, K.A., Rakshit, S., Petrik, C.M., Luo, J.Y., Schultz, C., Sasaki, D., Gillen, K., Pham, A., Somes, C., Brady, D.C., Testa,&hellip;<\/p>\n","category_list_v2":"","author_info_v2":{"name":"cnoufi","url":"https:\/\/umaine.edu\/bradylab\/author\/cnoufi\/"},"comments_num_v2":"0 comments","yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.9 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Publications : Marine Sciences of Aquaculture, Fisheries, and Renewable Energy<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/umaine.edu\/bradylab\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications : Marine Sciences of Aquaculture, Fisheries, and Renewable Energy\" \/>\n<meta property=\"og:description\" content=\"View our publications Damian&#8217;s Google Scholar Profile Damian&#8217;s ResearchGate Profile Liberti, C.M., Testa, J.M., Mayer, L.M., Salisbury, J., &amp; Brady, D.C. (in review) The relationship between carbonate chemistry, estuarine metabolism, and spring-neap tidal cycles in a northern temperate estuary. Estuaries and Coasts Jarrett, R.N., Reardon, K., Steneck, R., &amp; Brady, D.C. 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(in review) The relationship between carbonate chemistry, estuarine metabolism, and spring-neap tidal cycles in a northern temperate estuary. Estuaries and Coasts Jarrett, R.N., Reardon, K., Steneck, R., &amp; Brady, D.C. 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